IL_8UTJ_151

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_151 not in the Motif Atlas

Geometric match to IL_8CRE_438

Geometric discrepancy: 0.0829

The information below is about IL_8CRE_438

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8UTJ|1|2|C|779
8UTJ|1|2|A|780
8UTJ|1|2|A|781
8UTJ|1|2|A|782
8UTJ|1|2|C|783
*
8UTJ|1|2|G|799
8UTJ|1|2|G|800
8UTJ|1|2|U|801
8UTJ|1|2|A|802
8UTJ|1|2|G|803

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11

Chain z

30S ribosomal protein S21