IL_8UTJ_152

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_152 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.1052

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8UTJ|1|2|G|887
8UTJ|1|2|G|888
8UTJ|1|2|A|889
8UTJ|1|2|G|890
8UTJ|1|2|U|891
8UTJ|1|2|A|892
8UTJ|1|2|C|893
8UTJ|1|2|G|894
*
8UTJ|1|2|U|905
8UTJ|1|2|A|906
8UTJ|1|2|A|907
8UTJ|1|2|A|908
8UTJ|1|2|A|909
8UTJ|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12