IL_8UU4_016

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_016 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.1165

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8UU4|1|A|U|649
8UU4|1|A|U|650
8UU4|1|A|A|651
8UU4|1|A|A|652
8UU4|1|A|G|653
*
8UU4|1|A|C|663
8UU4|1|A|G|664
8UU4|1|A|G|665
8UU4|1|A|A|666
8UU4|1|A|G|667

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain N

Large ribosomal subunit protein uL15