IL_8UU4_018

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8UU4|1|A|G|847, 8UU4|1|A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_018 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0978

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8UU4|1|A|G|720
8UU4|1|A|A|721
8UU4|1|A|A|722
8UU4|1|A|A|723
8UU4|1|A|C|724
*
8UU4|1|A|G|845
8UU4|1|A|A|846
8UU4|1|A|G|847
8UU4|1|A|A|848
8UU4|1|A|U|849
8UU4|1|A|A|850
8UU4|1|A|G|851
8UU4|1|A|C|852

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain N

Large ribosomal subunit protein uL15