IL_8UU4_033

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_033 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.3111

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UU4|1|A|G|927
8UU4|1|A|G|928
8UU4|1|A|G|929
*
8UU4|1|A|U|941
8UU4|1|A|U|942
8UU4|1|A|A|943
8UU4|1|A|C|944

Current chains

Chain A

23S Ribosomal RNA

Nearby chains