IL_8UU4_040
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8UU4|1|A|A|1173, 8UU4|1|A|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_040 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.096
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8UU4|1|A|G|1070
8UU4|1|A|G|1071
8UU4|1|A|A|1072
8UU4|1|A|A|1073
8UU4|1|A|A|1074
8UU4|1|A|A|1075
8UU4|1|A|G|1076
*
8UU4|1|A|C|1170
8UU4|1|A|G|1171
8UU4|1|A|A|1172
8UU4|1|A|A|1173
8UU4|1|A|A|1174
8UU4|1|A|A|1175
8UU4|1|A|U|1176
8UU4|1|A|G|1177
8UU4|1|A|U|1178
8UU4|1|A|A|1179
8UU4|1|A|C|1180
8UU4|1|A|C|1181
8UU4|1|A|G|1182
8UU4|1|A|G|1183
8UU4|1|A|G|1184
8UU4|1|A|G|1185
8UU4|1|A|C|1186
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein uL13
- Chain O
- Large ribosomal subunit protein uL16
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