IL_8UU4_041
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 8UU4|1|A|U|1079
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_041 not in the Motif Atlas
- Homologous match to IL_7A0S_038
- Geometric discrepancy: 0.0933
- The information below is about IL_7A0S_038
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_30229.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8UU4|1|A|G|1077
8UU4|1|A|A|1078
8UU4|1|A|U|1079
8UU4|1|A|G|1080
*
8UU4|1|A|C|1167
8UU4|1|A|G|1168
8UU4|1|A|C|1169
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Large ribosomal subunit protein uL6
- Chain L
- Large ribosomal subunit protein uL13
- Chain O
- Large ribosomal subunit protein uL16
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