IL_8UU4_054

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_054 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1139

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8UU4|1|A|A|1456
8UU4|1|A|A|1457
8UU4|1|A|U|1458
*
8UU4|1|A|A|1637
8UU4|1|A|G|1638
8UU4|1|A|U|1639

Current chains

Chain A

23S Ribosomal RNA

Nearby chains