IL_8UU4_065

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_065 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.097

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8UU4|1|A|G|1715
8UU4|1|A|G|1716
8UU4|1|A|A|1717
8UU4|1|A|A|1718
*
8UU4|1|A|U|2026
8UU4|1|A|C|2027

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain M

Large ribosomal subunit protein uL14