IL_8UU4_088

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_088 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3811

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8UU4|1|A|G|2143
8UU4|1|A|U|2144
8UU4|1|A|A|2145
8UU4|1|A|C|2146
8UU4|1|A|A|2147
8UU4|1|A|G|2148
8UU4|1|A|G|2149
8UU4|1|A|A|2150
8UU4|1|A|U|2151
8UU4|1|A|A|2152
8UU4|1|A|G|2153
*
8UU4|1|A|C|2211
8UU4|1|A|C|2212

Current chains

Chain A

23S Ribosomal RNA

Nearby chains