IL_8UU4_089

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CAAUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_089 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.3274

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU4|1|A|G|2157
8UU4|1|A|G|2158
8UU4|1|A|A|2159
8UU4|1|A|G|2160
*
8UU4|1|A|C|2194
8UU4|1|A|A|2195
8UU4|1|A|A|2196
8UU4|1|A|U|2197
8UU4|1|A|G|2198
8UU4|1|A|G|2199
8UU4|1|A|U|2200
8UU4|1|A|G|2201
8UU4|1|A|G|2202
8UU4|1|A|G|2203
8UU4|1|A|A|2204
8UU4|1|A|U|2205
8UU4|1|A|A|2206
8UU4|1|A|C|2207

Current chains

Chain A

23S Ribosomal RNA

Nearby chains