IL_8UU4_105
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8UU4|1|A|G|2813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_105 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0899
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8UU4|1|A|U|2669
8UU4|1|A|U|2670
8UU4|1|A|G|2671
8UU4|1|A|A|2672
8UU4|1|A|G|2673
*
8UU4|1|A|C|2807
8UU4|1|A|A|2808
8UU4|1|A|A|2809
8UU4|1|A|G|2810
8UU4|1|A|A|2811
8UU4|1|A|U|2812
8UU4|1|A|G|2813
8UU4|1|A|A|2814
8UU4|1|A|G|2815
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein uL13
Coloring options: