IL_8UU4_106
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_106 not in the Motif Atlas
- Geometric match to IL_5J7L_346
- Geometric discrepancy: 0.1009
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU4|1|A|U|2685
8UU4|1|A|U|2686
8UU4|1|A|A|2687
8UU4|1|A|G|2688
8UU4|1|A|U|2689
8UU4|1|A|A|2690
8UU4|1|A|C|2691
*
8UU4|1|A|G|2696
8UU4|1|A|G|2697
8UU4|1|A|A|2698
8UU4|1|A|C|2699
8UU4|1|A|C|2700
8UU4|1|A|G|2701
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL6
Coloring options: