IL_8UU4_111

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

8UU4|1|A|A|2908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_111 not in the Motif Atlas

Homologous match to IL_5J7L_352

Geometric discrepancy: 0.0696

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

8UU4|1|A|G|2867
8UU4|1|A|G|2868
*
8UU4|1|A|U|2907
8UU4|1|A|A|2908
8UU4|1|A|C|2909

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17