IL_8UU4_140

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_140 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0987

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8UU4|1|a|C|512
8UU4|1|a|G|513
8UU4|1|a|G|514
8UU4|1|a|C|515
8UU4|1|a|U|516
8UU4|1|a|A|517
8UU4|1|a|A|518
8UU4|1|a|C|519
*
8UU4|1|a|G|548
8UU4|1|a|G|549

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12