IL_8UU4_151
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_151 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0967
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8UU4|1|a|G|681
8UU4|1|a|G|682
8UU4|1|a|A|683
8UU4|1|a|A|684
8UU4|1|a|U|685
8UU4|1|a|U|686
*
8UU4|1|a|A|720
8UU4|1|a|G|721
8UU4|1|a|G|722
8UU4|1|a|A|723
8UU4|1|a|A|724
8UU4|1|a|C|725
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain f
- Small ribosomal subunit protein bS6
- Chain k
- Small ribosomal subunit protein uS11
- Chain r
- Small ribosomal subunit protein bS18
Coloring options: