IL_8UU4_172

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCG*CCAAUC

Length

10 nucleotides

Bulged bases

8UU4|1|a|C|1264, 8UU4|1|a|A|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_172 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1733

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8UU4|1|a|G|1262
8UU4|1|a|U|1263
8UU4|1|a|C|1264
8UU4|1|a|G|1265
*
8UU4|1|a|C|1284
8UU4|1|a|C|1285
8UU4|1|a|A|1286
8UU4|1|a|A|1287
8UU4|1|a|U|1288
8UU4|1|a|C|1289

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14