IL_8UU4_175

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8UU4|1|a|C|1407, 8UU4|1|a|A|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_175 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1415

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8UU4|1|a|C|1406
8UU4|1|a|C|1407
8UU4|1|a|G|1408
*
8UU4|1|a|C|1509
8UU4|1|a|A|1510
8UU4|1|a|A|1511
8UU4|1|a|G|1512

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain w

Ribosome hibernation promoting factor