IL_8UU5_018

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8UU5|1|A|G|847, 8UU5|1|A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0922

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|G|720
8UU5|1|A|A|721
8UU5|1|A|A|722
8UU5|1|A|A|723
8UU5|1|A|C|724
*
8UU5|1|A|G|845
8UU5|1|A|A|846
8UU5|1|A|G|847
8UU5|1|A|A|848
8UU5|1|A|U|849
8UU5|1|A|A|850
8UU5|1|A|G|851
8UU5|1|A|C|852

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain N

Large ribosomal subunit protein uL15