3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAAAAG*CGAAAAUGUACCGGGGC
Length
24 nucleotides
Bulged bases
8UU5|1|A|A|1173, 8UU5|1|A|U|1176
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UU5_040 not in the Motif Atlas
Geometric match to IL_4WF9_040
Geometric discrepancy: 0.0943
The information below is about IL_4WF9_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8UU5|1|A|G|1070
8UU5|1|A|G|1071
8UU5|1|A|A|1072
8UU5|1|A|A|1073
8UU5|1|A|A|1074
8UU5|1|A|A|1075
8UU5|1|A|G|1076
*
8UU5|1|A|C|1170
8UU5|1|A|G|1171
8UU5|1|A|A|1172
8UU5|1|A|A|1173
8UU5|1|A|A|1174
8UU5|1|A|A|1175
8UU5|1|A|U|1176
8UU5|1|A|G|1177
8UU5|1|A|U|1178
8UU5|1|A|A|1179
8UU5|1|A|C|1180
8UU5|1|A|C|1181
8UU5|1|A|G|1182
8UU5|1|A|G|1183
8UU5|1|A|G|1184
8UU5|1|A|G|1185
8UU5|1|A|C|1186

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
Large ribosomal subunit protein bL36
Chain B
5S ribosomal RNA; 5S rRNA
Chain D
Large ribosomal subunit protein uL3
Chain L
Large ribosomal subunit protein uL13
Chain O
Large ribosomal subunit protein uL16

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