IL_8UU5_089

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CAAUGGUGGGAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_089 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2436

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8UU5|1|A|G|2157
8UU5|1|A|G|2158
8UU5|1|A|A|2159
8UU5|1|A|G|2160
*
8UU5|1|A|C|2194
8UU5|1|A|A|2195
8UU5|1|A|A|2196
8UU5|1|A|U|2197
8UU5|1|A|G|2198
8UU5|1|A|G|2199
8UU5|1|A|U|2200
8UU5|1|A|G|2201
8UU5|1|A|G|2202
8UU5|1|A|G|2203
8UU5|1|A|A|2204
8UU5|1|A|U|2205
8UU5|1|A|A|2206
8UU5|1|A|C|2207

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA