3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
8UU5|1|A|G|2813
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UU5_105 not in the Motif Atlas
Homologous match to IL_4WF9_099
Geometric discrepancy: 0.0709
The information below is about IL_4WF9_099
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

8UU5|1|A|U|2669
8UU5|1|A|U|2670
8UU5|1|A|G|2671
8UU5|1|A|A|2672
8UU5|1|A|G|2673
*
8UU5|1|A|C|2807
8UU5|1|A|A|2808
8UU5|1|A|A|2809
8UU5|1|A|G|2810
8UU5|1|A|A|2811
8UU5|1|A|U|2812
8UU5|1|A|G|2813
8UU5|1|A|A|2814
8UU5|1|A|G|2815

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain D
Large ribosomal subunit protein uL3
Chain L
Large ribosomal subunit protein uL13

Coloring options:


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