IL_8UU5_113

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_113 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.095

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|U|2876
8UU5|1|A|G|2877
8UU5|1|A|G|2878
8UU5|1|A|A|2879
8UU5|1|A|A|2880
8UU5|1|A|G|2881
*
8UU5|1|A|U|2894
8UU5|1|A|G|2895
8UU5|1|A|G|2896
8UU5|1|A|A|2897
8UU5|1|A|G|2898

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17

Chain R

Large ribosomal subunit protein bL19