IL_8UU5_118
3D structure
- PDB id
- 8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU5_118 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1194
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UU5|1|B|C|69
8UU5|1|B|A|70
8UU5|1|B|A|71
8UU5|1|B|U|72
8UU5|1|B|G|73
8UU5|1|B|G|74
8UU5|1|B|U|75
8UU5|1|B|A|76
8UU5|1|B|G|77
*
8UU5|1|B|C|95
8UU5|1|B|G|96
8UU5|1|B|A|97
8UU5|1|B|G|98
8UU5|1|B|A|99
8UU5|1|B|G|100
8UU5|1|B|U|101
8UU5|1|B|A|102
8UU5|1|B|G|103
Current chains
- Chain B
- 5S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- Large ribosomal subunit protein uL16
- Chain Y
- Large ribosomal subunit protein bL27
Coloring options: