IL_8UU5_142
3D structure
- PDB id
- 8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU5_142 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1425
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8UU5|1|a|C|512
8UU5|1|a|G|513
8UU5|1|a|G|514
8UU5|1|a|C|515
8UU5|1|a|U|516
8UU5|1|a|A|517
8UU5|1|a|A|518
8UU5|1|a|C|519
*
8UU5|1|a|G|548
8UU5|1|a|G|549
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
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