IL_8UU5_165

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCAU*AUGC

Length

10 nucleotides

Bulged bases

8UU5|1|a|C|1063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_165 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3633

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8UU5|1|a|G|1060
8UU5|1|a|U|1061
8UU5|1|a|G|1062
8UU5|1|a|C|1063
8UU5|1|a|A|1064
8UU5|1|a|U|1065
*
8UU5|1|a|A|1211
8UU5|1|a|U|1212
8UU5|1|a|G|1213
8UU5|1|a|C|1214

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14