IL_8UU6_033

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8UU6|1|A|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_033 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3166

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8UU6|1|A|G|927
8UU6|1|A|G|928
8UU6|1|A|G|929
*
8UU6|1|A|U|941
8UU6|1|A|U|942
8UU6|1|A|A|943
8UU6|1|A|C|944

Current chains

Chain A

23S Ribosomal RNA

Nearby chains