IL_8UU6_037
3D structure
- PDB id
- 8UU6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCCCCAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU6_037 not in the Motif Atlas
- Homologous match to IL_5J7L_278
- Geometric discrepancy: 0.1179
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8UU6|1|A|U|1050
8UU6|1|A|C|1051
8UU6|1|A|C|1052
8UU6|1|A|C|1053
8UU6|1|A|C|1054
8UU6|1|A|A|1055
8UU6|1|A|A|1056
8UU6|1|A|A|1057
*
8UU6|1|A|U|1196
8UU6|1|A|A|1197
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL13
- Chain S
- Large ribosomal subunit protein bL20
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