IL_8UU6_041

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8UU6|1|A|U|1079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_041 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.1321

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8UU6|1|A|G|1077
8UU6|1|A|A|1078
8UU6|1|A|U|1079
8UU6|1|A|G|1080
*
8UU6|1|A|C|1167
8UU6|1|A|G|1168
8UU6|1|A|C|1169

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

Large ribosomal subunit protein uL16