IL_8UU6_053

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

8UU6|1|A|G|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_053 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1316

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8UU6|1|A|G|1363
8UU6|1|A|G|1364
8UU6|1|A|A|1365
8UU6|1|A|A|1366
8UU6|1|A|G|1367
*
8UU6|1|A|C|1375
8UU6|1|A|G|1376
8UU6|1|A|C|1377

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL22