IL_8UU6_072

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAA*UGACGUAUA

Length

16 nucleotides

Bulged bases

8UU6|1|A|A|1834, 8UU6|1|A|C|1849, 8UU6|1|A|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_072 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1067

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8UU6|1|A|U|1831
8UU6|1|A|G|1832
8UU6|1|A|C|1833
8UU6|1|A|A|1834
8UU6|1|A|A|1835
8UU6|1|A|A|1836
8UU6|1|A|A|1837
*
8UU6|1|A|U|1846
8UU6|1|A|G|1847
8UU6|1|A|A|1848
8UU6|1|A|C|1849
8UU6|1|A|G|1850
8UU6|1|A|U|1851
8UU6|1|A|A|1852
8UU6|1|A|U|1853
8UU6|1|A|A|1854

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA