IL_8UU6_074

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8UU6|1|A|A|1932, 8UU6|1|A|A|1933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_074 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.175

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UU6|1|A|U|1874
8UU6|1|A|G|1875
*
8UU6|1|A|U|1931
8UU6|1|A|A|1932
8UU6|1|A|A|1933
8UU6|1|A|A|1934

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA