IL_8UU6_108

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_108 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1174

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8UU6|1|A|U|2685
8UU6|1|A|U|2686
8UU6|1|A|A|2687
8UU6|1|A|G|2688
8UU6|1|A|U|2689
8UU6|1|A|A|2690
8UU6|1|A|C|2691
*
8UU6|1|A|G|2696
8UU6|1|A|G|2697
8UU6|1|A|A|2698
8UU6|1|A|C|2699
8UU6|1|A|C|2700
8UU6|1|A|G|2701

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6