IL_8UU6_121

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_121 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.119

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UU6|1|B|U|78
8UU6|1|B|U|79
8UU6|1|B|G|80
*
8UU6|1|B|C|92
8UU6|1|B|U|93
8UU6|1|B|G|94

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain O

Large ribosomal subunit protein uL16