IL_8UU6_129

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8UU6|1|a|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1756

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8UU6|1|a|G|146
8UU6|1|a|G|147
8UU6|1|a|A|148
8UU6|1|a|U|149
8UU6|1|a|A|150
8UU6|1|a|A|151
8UU6|1|a|C|152
*
8UU6|1|a|G|167
8UU6|1|a|C|168
8UU6|1|a|U|169
8UU6|1|a|A|170
8UU6|1|a|A|171
8UU6|1|a|U|172
8UU6|1|a|A|173
8UU6|1|a|C|174

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20