IL_8UU6_157

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8UU6|1|a|C|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_157 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1548

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8UU6|1|a|G|942
8UU6|1|a|C|943
8UU6|1|a|A|944
*
8UU6|1|a|U|1387
8UU6|1|a|U|1388
8UU6|1|a|C|1389
8UU6|1|a|C|1390
8UU6|1|a|C|1391

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7

Chain i

Small ribosomal subunit protein uS9

Chain x

Transfer RNA; tRNA