IL_8UU6_170

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCG*CCAAUC

Length

10 nucleotides

Bulged bases

8UU6|1|a|C|1264, 8UU6|1|a|A|1287, 8UU6|1|a|U|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_170 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1861

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8UU6|1|a|G|1262
8UU6|1|a|U|1263
8UU6|1|a|C|1264
8UU6|1|a|G|1265
*
8UU6|1|a|C|1284
8UU6|1|a|C|1285
8UU6|1|a|A|1286
8UU6|1|a|A|1287
8UU6|1|a|U|1288
8UU6|1|a|C|1289

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10