IL_8UU6_172

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_172 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1476

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8UU6|1|a|C|1310
8UU6|1|a|G|1311
8UU6|1|a|G|1312
8UU6|1|a|A|1313
8UU6|1|a|U|1314
8UU6|1|a|U|1315
*
8UU6|1|a|A|1336
8UU6|1|a|U|1337
8UU6|1|a|G|1338
8UU6|1|a|A|1339
8UU6|1|a|A|1340
8UU6|1|a|G|1341

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13