IL_8UU6_182

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAGG*CAG

Length

7 nucleotides

Bulged bases

8UU6|1|a|G|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_182 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.1769

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8UU6|1|a|U|1447
8UU6|1|a|A|1448
8UU6|1|a|G|1449
8UU6|1|a|G|1450
*
8UU6|1|a|C|1467
8UU6|1|a|A|1468
8UU6|1|a|G|1469

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL19

Chain t

Small ribosomal subunit protein bS20