IL_8UU7_050

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8UU7|1|A|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_050 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1168

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8UU7|1|A|C|1253
8UU7|1|A|G|1254
8UU7|1|A|G|1255
8UU7|1|A|U|1256
8UU7|1|A|G|1257
8UU7|1|A|A|1258
8UU7|1|A|A|1259
8UU7|1|A|G|1260
*
8UU7|1|A|U|1279
8UU7|1|A|G|1280
8UU7|1|A|G|1281
8UU7|1|A|A|1282
8UU7|1|A|G|1283

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20