IL_8UU7_059

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

8UU7|1|A|U|1470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_059 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2441

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8UU7|1|A|C|1467
8UU7|1|A|G|1468
8UU7|1|A|A|1469
8UU7|1|A|U|1470
8UU7|1|A|G|1471
*
8UU7|1|A|C|1629
8UU7|1|A|U|1630
8UU7|1|A|A|1631
8UU7|1|A|G|1632

Current chains

Chain A

23S Ribosomal RNA

Nearby chains