IL_8UU7_060

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CACGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_060 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2807

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8UU7|1|A|G|1482
8UU7|1|A|A|1483
8UU7|1|A|A|1484
8UU7|1|A|G|1485
*
8UU7|1|A|C|1609
8UU7|1|A|A|1610
8UU7|1|A|C|1611
8UU7|1|A|G|1612
8UU7|1|A|C|1613

Current chains

Chain A

23S Ribosomal RNA

Nearby chains