IL_8UU7_090

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUACAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

8UU7|1|A|A|2152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_090 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2113

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8UU7|1|A|G|2143
8UU7|1|A|U|2144
8UU7|1|A|A|2145
8UU7|1|A|C|2146
8UU7|1|A|A|2147
8UU7|1|A|G|2148
8UU7|1|A|G|2149
8UU7|1|A|A|2150
8UU7|1|A|U|2151
8UU7|1|A|A|2152
8UU7|1|A|G|2153
8UU7|1|A|G|2154
*
8UU7|1|A|C|2210
8UU7|1|A|C|2211
8UU7|1|A|C|2212

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA