IL_8UU7_177

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_177 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1537

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UU7|1|a|C|1310
8UU7|1|a|G|1311
8UU7|1|a|G|1312
8UU7|1|a|A|1313
8UU7|1|a|U|1314
8UU7|1|a|U|1315
*
8UU7|1|a|A|1336
8UU7|1|a|U|1337
8UU7|1|a|G|1338
8UU7|1|a|A|1339
8UU7|1|a|A|1340
8UU7|1|a|G|1341

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13