IL_8UU8_007

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_007 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0873

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8UU8|1|A|C|240
8UU8|1|A|U|241
8UU8|1|A|G|242
8UU8|1|A|A|243
8UU8|1|A|G|244
8UU8|1|A|U|245
8UU8|1|A|A|246
8UU8|1|A|G|247
*
8UU8|1|A|C|255
8UU8|1|A|G|256
8UU8|1|A|A|257
8UU8|1|A|A|258
8UU8|1|A|A|259
8UU8|1|A|C|260
8UU8|1|A|G|261

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain N

Large ribosomal subunit protein uL15