IL_8UU8_038

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8UU8|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_038 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0872

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8UU8|1|A|U|1064
8UU8|1|A|U|1065
8UU8|1|A|A|1066
8UU8|1|A|A|1067
8UU8|1|A|G|1068
8UU8|1|A|U|1069
8UU8|1|A|G|1070
*
8UU8|1|A|C|1186
8UU8|1|A|U|1187
8UU8|1|A|A|1188
8UU8|1|A|A|1189
8UU8|1|A|A|1190

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain L

Large ribosomal subunit protein uL13