3D structure

PDB id
8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGUUG*CAAAUCAUC
Length
14 nucleotides
Bulged bases
8UU8|1|a|A|1203, 8UU8|1|a|C|1207, 8UU8|1|a|A|1208
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UU8|1|a|G|1066
8UU8|1|a|G|1067
8UU8|1|a|U|1068
8UU8|1|a|U|1069
8UU8|1|a|G|1070
*
8UU8|1|a|C|1202
8UU8|1|a|A|1203
8UU8|1|a|A|1204
8UU8|1|a|A|1205
8UU8|1|a|U|1206
8UU8|1|a|C|1207
8UU8|1|a|A|1208
8UU8|1|a|U|1209
8UU8|1|a|C|1210

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain c
Small ribosomal subunit protein uS3
Chain j
Small ribosomal subunit protein uS10
Chain n
Small ribosomal subunit protein uS14

Coloring options:

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