IL_8UU9_013

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAC*GAGUGAAACAGUUC

Length

18 nucleotides

Bulged bases

8UU9|1|A|C|549, 8UU9|1|A|U|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_013 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.2014

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8UU9|1|A|G|527
8UU9|1|A|C|528
8UU9|1|A|A|529
8UU9|1|A|C|530
*
8UU9|1|A|G|541
8UU9|1|A|A|542
8UU9|1|A|G|543
8UU9|1|A|U|544
8UU9|1|A|G|545
8UU9|1|A|A|546
8UU9|1|A|A|547
8UU9|1|A|A|548
8UU9|1|A|C|549
8UU9|1|A|A|550
8UU9|1|A|G|551
8UU9|1|A|U|552
8UU9|1|A|U|553
8UU9|1|A|C|554

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL22

Chain W

Large ribosomal subunit protein uL24