3D structure

PDB id
8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8UU9|1|A|G|847, 8UU9|1|A|G|851
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UU9_018 not in the Motif Atlas
Homologous match to IL_5J7L_260
Geometric discrepancy: 0.0929
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8UU9|1|A|G|720
8UU9|1|A|A|721
8UU9|1|A|A|722
8UU9|1|A|A|723
8UU9|1|A|C|724
*
8UU9|1|A|G|845
8UU9|1|A|A|846
8UU9|1|A|G|847
8UU9|1|A|A|848
8UU9|1|A|U|849
8UU9|1|A|A|850
8UU9|1|A|G|851
8UU9|1|A|C|852

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain E
Large ribosomal subunit protein uL4
Chain N
Large ribosomal subunit protein uL15

Coloring options:


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