IL_8UU9_018
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8UU9|1|A|G|847, 8UU9|1|A|G|851
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU9_018 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.0929
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UU9|1|A|G|720
8UU9|1|A|A|721
8UU9|1|A|A|722
8UU9|1|A|A|723
8UU9|1|A|C|724
*
8UU9|1|A|G|845
8UU9|1|A|A|846
8UU9|1|A|G|847
8UU9|1|A|A|848
8UU9|1|A|U|849
8UU9|1|A|A|850
8UU9|1|A|G|851
8UU9|1|A|C|852
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain N
- Large ribosomal subunit protein uL15
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