IL_8UU9_044

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8UU9|1|A|G|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_044 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.106

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

8UU9|1|A|C|1242
8UU9|1|A|G|1243
8UU9|1|A|U|1244
*
8UU9|1|A|A|1292
8UU9|1|A|G|1293
8UU9|1|A|U|1294
8UU9|1|A|G|1295

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain N

Large ribosomal subunit protein uL15

Chain S

Large ribosomal subunit protein bL20